Bioinformatics Research Centre

TOPS Services At Glasgow University

MATCHING AND VISUALIZATION SOFTWARE

The archives contain both the classfiles (in jars) and some data. If you download the classes and data separately, you may want to read the README.

Classes and Data in a compressed archive Classes

DATA IN TOPSSTRING FORMAT

Data

DATA TRANSLATION

To get structures into the data format that the matching programs understand there is a pipeline of programs to translate pdb files. Some of the necessary software (dssp) is external to the TOPS project, and some (tops) is provided at the leeds site. This is a diagram of the pipeline:

And here are the links to the pipeline software:

Note that not all platforms are supported. UNIX-like OS users are likely to be happiest. Tops executables for OSX are available by request.


Page maintained by : Gilleain Torrance.
Mail to : tops@dcs.gla.ac.uk